PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10024319m

Common Name

CICLE_v10024319mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

DBB

Protein Properties

Length: 199aa MW: 21343.6 Da PI: 5.2477

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10024319m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.1	6.7e-07	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e+ e++ C ++ lC +C ++ H H++v+l Ciclev10024319m 4 QCEVCEKAEAEVLCCADEAVLCSNCDVKVHTAnklsrkHQRVSL 47 7*****************************55788889998875 PP
2	zf-B_box	31	5.3e-10	67	109	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + + C+ ++e + +fC +++ lC++C +++Hk H+ Ciclev10024319m 67 QLPSCDICQERNGYFFCLEDRAILCRQCDVSIHKAspfqssHQ 109 7899****99*******************8777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	2.9E-10	1	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.926	1	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.1E-5	4	47	IPR000315	B-box-type zinc finger
CDD	cd00021	6.50E-6	5	47	No hit	No description
SuperFamily	SSF57845	3.43E-5	65	105	No hit	No description
SMART	SM00336	4.5E-13	66	113	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.958	66	113	IPR000315	B-box-type zinc finger
Pfam	PF00643	6.2E-8	67	109	IPR000315	B-box-type zinc finger
CDD	cd00021	3.21E-8	69	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MKLQCEVCEK AEAEVLCCAD EAVLCSNCDV KVHTANKLSR KHQRVSLLKH NAAAASSSSS 60 SSPSASQLPS CDICQERNGY FFCLEDRAIL CRQCDVSIHK ASPFQSSHQR FLIGGIKVAL 120 ESSADNNSRT SETYFPTAAA EESRQAMTMD SSTGSGSGLA AAHLATAASS CSWQLDDLLG 180 NDDFNYHDFS DTESSRIN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006441859.1	1e-144	hypothetical protein CICLE_v10024319mg
TrEMBL	V4VQ44	1e-144	V4VQ44_9R
STRING	VIT_18s0089g01280.t01	1e-63	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12502	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	9e-47	light-regulated zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Ciclev10024319m
Entrez Gene	18046748